CDS

Accession Number TCMCG042C03804
gbkey CDS
Protein Id XP_016435940.1
Location complement(join(117324..117339,117907..118232,118518..119009,119526..119675,121192..121263,121341..121601,122701..122832,122908..123159,123493..123741,123827..123925,126663..126827,127061..127255,128488..129444))
Gene LOC107762128
GeneID 107762128
Organism Nicotiana tabacum

Protein

Length 1121aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA319578
db_source XM_016580454.1
Definition PREDICTED: DNA mismatch repair protein MSH3 isoform X1 [Nicotiana tabacum]

EGGNOG-MAPPER Annotation

COG_category L
Description Component of the post-replicative DNA mismatch repair system (MMR)
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K08736        [VIEW IN KEGG]
EC -
KEGG_Pathway ko01524        [VIEW IN KEGG]
ko03430        [VIEW IN KEGG]
ko05200        [VIEW IN KEGG]
ko05210        [VIEW IN KEGG]
map01524        [VIEW IN KEGG]
map03430        [VIEW IN KEGG]
map05200        [VIEW IN KEGG]
map05210        [VIEW IN KEGG]
GOs GO:0000217        [VIEW IN EMBL-EBI]
GO:0000404        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003684        [VIEW IN EMBL-EBI]
GO:0003690        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006298        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0008094        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0016887        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0030983        [VIEW IN EMBL-EBI]
GO:0032135        [VIEW IN EMBL-EBI]
GO:0032300        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0042623        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043570        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1990391        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGGAAAACCAAAACAACAAGTGATTTCCCGCTTCTTTGCACCAAAACCAAAGAACGAAAAAGACCCTTCAACTTCAGCTTCAACCCCTCCCTGTACTCCACCTCCCAAAATTACTGCCACCGTCACCTTTTCACCTGCAAAACGCCTCAGAAATTCTCAACTCACTTCTCCTCCTCCCACAAAACACACCAAAATCCCTAAGCTATCACCCCACGTACACAACCCACCCCCTCCTCTTCCTAACCCCACTCTCCACCAGAGGTTCCTGGATAAACTTCTAGAACCATCTACCGACCTTCTGGAACCTTCTAAATGTTATGATATTCAAAACCCCAAGTACACACCATTAGAGCAACAAGTTGTGGAGCTTAAGGCCAAGTACCCAGACATTTTATTGATGATCGAAGTTGGTTATAAGTACAGATTTTTTGGTCAGGATGCAGAAAATGCTGCTAGGGTTTTAGGAATTTATGCACATATGGATCACAATTTCTTAACAGCTAGTGTACCGACTTTTCGGCTGAATGTCCACGTAAGGAGGCTGGTGAGTGCAGGATACAAAGTTGGTGTTGTTAAGCAAACGGAGACTGCTGCAATTAAGGCACATGGCTCGAATAAATTGGGCCCTTTTGGCCGTGGGTTATCGGCACTGTACACGAAAGCTACTCTGGAGGCTTCGGAAGATGTAGGGGGTGGAGATGAGGGAGTCGGGTCATGTAATAACTATTTGTGTTGTGTTGTTGAGAAGGGAATGGAGGATGTTGATTTTGGGATTGAGGGTTGTAGGGGGGTTGATGTGAAAATCGGGGTTGTTGGGGTTGAAGTTTCGACCGGAGATGTTGTTTATGGGGAGTTCAATGATAATTTTATGAGGGTGGGGTTGGAGGCGATGATCCTCAACTTGATGCCAGCTGAATTGCTTGTTGCCAAGCCTATATCTAAGCAGACAGAGAAGCTGCTACTGGCTTATGCTGGACCAGCATCTAATGTTAGGGTGGAGGATGTATCATCAGATCGGTTCAGTGATGGCGGTGCTCTTGCTGAAGTGATGTCTCTATATGAGGGCATGCAGGAACATTATTTGTCAAATGTCCAAGAAAGGGAAGAGGCTGAAGTGAAAATGCACGAACACAATCGGATCACAATCCAGGGAATGATGGCAATGCCTGGTCTGGCTATACAAGCATTGGCCTTAATTATTAGACATCTAAAACAATTTGGTTTGGAAAGAGTTCTGTGCTTGGGAGCTTCATTTCGTCCCTTCTCTTGCAACATGGAGATGACCCTTTCAGCCAATGCACTGCAGCAACTTGAGGTTTTGAAGAATAATTTTGACGGATCCGAATCTGGCTCCTTACTGCATTGTATGAATCAGACACTTACTGTAATTGGTTCAAGGCTTCTCAGGCACTGGGTGACTCATCCTTTATGTGATAGAAACATGATAGCTGCTCGTCTTGATGCAGTTTCAGAGATTGCAGAATCTATGAAAACTTATCGAACTTCTTATACTTCTTTCTTAGAGGTGGAAGGTGCTGATGTCACCATTTCGCAACCAGAGATACATCATATAATTTCTTCAGTTCTGTCCACTCTAGGAAGGTCACCAGATATTCAACGCGGGATTACAAGAATTTTTCACAGAAAAGCTACCGCATCTGAGTTTATTGCAGTCATTCAAGCTATCTTGACTGCTGCAAAACAACTTCAGCAGCTTTGGATAGAAGAGGATAAAAGTACGAATCTGCAAAGAGAGACCTTGCGCTCAGTACTGTTGAGAAAGTTGATATCAGTTGCCTCATCGTCTACTGTTATTAATGCTGCCGCAAAGCTTTTGTCTGCTTTAAACAAGGAAGCCGCTGACAGACGAGATCTTCACAATTTATTCTTCATTTCGGATGGAAAGTTCCCTGAGGTTGCTGAAGTTACAAGGAGAGTTGAGTTGGCAAATGAGAAGTTAGACTCATTAATTGGTGTGTATCGCAAGCAGCTTCATGTCCGCAATTTGGAGTACATGAGTGTAGCTGGAATTACACATTTGATAGAGTTGCCTCTAGACACAAAGGTGCCGCCAGATTGGGTCAAAGTGAACAGTACTAAGAAAGCAATACGCTATCATCCACCAGAAGTATTAGTGGCTTTAGATGAATTAGCATTGGCAAATGAGCAGCTCACTGTCGTTTGCCAAGCTGCTTGGAATAAATTTTTAACGAGTTTTGGTGGATACTTTGCTGAGTTCCAAGCAGCTGTGCAAGCCCTGGCTTCACTGGATTGTCTAAATTCTCTTGCCATTCTTTCGAGGAATAAGAATTATGTCCGTCCACTCTTTGTGAAAGATGATGAGGCTGTTCAGATACATATTTGCTCTGGTCGTCACCCGGTTTTGGAGAGAGTATTACAAGATAACTTTGTCCCAAATGATACAGATTTGCATGCAGAAAGAGAGTATTGTCAGATTGTTACTGGACCAAATATGGGAGGAAAAAGTTGCTATATTCGCCAAGTTGCTCTTATTGCTTTGATGGCTCAGGTTGGATCCTTTGTTCCAGCGTTCTCTGCAAAACTGCACGTGCTAGATGGCATATATACTCGCATGGGTGCATCAGACAGTATACAGCAAGGAAGAAGTACATTCTTAGAAGAACTCAGCGAGGCTTCTGATATACTGAAAAAATGCTCAGCCAGCTCGTTGGTTATACTTGATGAGCTTGGGAGAGGCACCAGTACGCATGATGGCGTAGCAATTGCTTATGCAACACTTCAGTATCTCCTAGAGCACAAGAAATGCATGATTCTATTTGTCACCCATTACCCTGAAATTGTCAGTATCAAGAATGAATATCCAGGCTCTGTGGAACCATACCATGTGTCATACCTGACATCCCAAAGAGATGTGAATGGCGATTTCAAGTCAAATGAGAAGATGGATCTCATCAATACTGAAGACATCACCTACCTTTACAAACTTGCACCAGGGGTCTGTGAGAGAAGTTTTGGTTTTAAAGTTGCTCAGCTTGCACAACTGCCGGTTGCGTGTATTCAACGAGCCATTGTAATAGCTGGAAGACTAGAAGCAGCAGTCTCTAACTACACAGTGCAAAATCGAACTAGAAGGAGCTCTTCCATAAGTTATAGCATAGATGGTTGTAAAGAATCTGAACCAGTGGAGTATGTCTTAGAACCTGATTGCTTGTCTGCTGGAAGAGCTGAACGCTTAGATGATATGAGCGAGCTTTATAGGGAGTTGTTTCTGAACCTAAACTTCGCACTTCTTGAAGAACATGATGATGACAGGAGGCTTCAGTTTCTAATGCAGGCTAGAGGGCTTGCAGCTCAGTTAATAAGTAGTTGCATTTCTTCATAA
Protein:  
MGKPKQQVISRFFAPKPKNEKDPSTSASTPPCTPPPKITATVTFSPAKRLRNSQLTSPPPTKHTKIPKLSPHVHNPPPPLPNPTLHQRFLDKLLEPSTDLLEPSKCYDIQNPKYTPLEQQVVELKAKYPDILLMIEVGYKYRFFGQDAENAARVLGIYAHMDHNFLTASVPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHGSNKLGPFGRGLSALYTKATLEASEDVGGGDEGVGSCNNYLCCVVEKGMEDVDFGIEGCRGVDVKIGVVGVEVSTGDVVYGEFNDNFMRVGLEAMILNLMPAELLVAKPISKQTEKLLLAYAGPASNVRVEDVSSDRFSDGGALAEVMSLYEGMQEHYLSNVQEREEAEVKMHEHNRITIQGMMAMPGLAIQALALIIRHLKQFGLERVLCLGASFRPFSCNMEMTLSANALQQLEVLKNNFDGSESGSLLHCMNQTLTVIGSRLLRHWVTHPLCDRNMIAARLDAVSEIAESMKTYRTSYTSFLEVEGADVTISQPEIHHIISSVLSTLGRSPDIQRGITRIFHRKATASEFIAVIQAILTAAKQLQQLWIEEDKSTNLQRETLRSVLLRKLISVASSSTVINAAAKLLSALNKEAADRRDLHNLFFISDGKFPEVAEVTRRVELANEKLDSLIGVYRKQLHVRNLEYMSVAGITHLIELPLDTKVPPDWVKVNSTKKAIRYHPPEVLVALDELALANEQLTVVCQAAWNKFLTSFGGYFAEFQAAVQALASLDCLNSLAILSRNKNYVRPLFVKDDEAVQIHICSGRHPVLERVLQDNFVPNDTDLHAEREYCQIVTGPNMGGKSCYIRQVALIALMAQVGSFVPAFSAKLHVLDGIYTRMGASDSIQQGRSTFLEELSEASDILKKCSASSLVILDELGRGTSTHDGVAIAYATLQYLLEHKKCMILFVTHYPEIVSIKNEYPGSVEPYHVSYLTSQRDVNGDFKSNEKMDLINTEDITYLYKLAPGVCERSFGFKVAQLAQLPVACIQRAIVIAGRLEAAVSNYTVQNRTRRSSSISYSIDGCKESEPVEYVLEPDCLSAGRAERLDDMSELYRELFLNLNFALLEEHDDDRRLQFLMQARGLAAQLISSCISS